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Fiona Hyslop met representatives of the City of Yokohama.
Hyslop, who was on a three-day visit to Japan, also took part in a sell-out seminar on diversity and inclusion organised by the British Chamber of Commerce in Japan.
The agreement between Scotland and Yokohama includes close cooperation in sport, education, culture and marine industries, according to the report.
Hyslop’s trip to Japan ended with a tourism networking lunch at the British Embassy Tokyo.